University of Rostock
Institute of Immunology

funded by the BMBF

Easy Selection of SNPs in EnsEMBL

Please enter constraints to the SNPs as offered in the respective text areas below. The attributes reflect the schema of the EnsEMBL mart SQL tables. Online help is available as popup menus when moving the mouse over the subheaders of an input field.


Steffen Möller, Pablo Serrano-Fernández,
Dirk Koczan, Uwe K. Zettl, Saleh M. Ibrahim

Mark those attributes that should appear in the result - Try to e.g. filter for min 0.02 on east asia

Connect constraint-blocks with:
SNP Main fieldsSNP Gene fieldsEnsEMBL Gene/Protein SNP data
AttributeMinMax
snp_id  
contig  
snp_contig_start  
strand  
snp_chrom_start
chrom_strand
fpcctg_name  
chr_name  
chromosome_id  
tscid
hgbaseid
external_id
datasource
allele
mapweight
subsnpcount
snpclass  
validated  
het
hetse
ensemblcoding
ensemblintronic
ensembl5utr
ensembl3utr
ensembl5upstream
ensembl3downstream
ensemblsyn
ensemblnonsyn
ensemblstop
freq  
subsnp_data  
multi_national
north_america
east_asia
central_south_america
pacific
europe
central_south_africa
unknown
west_africa
north_east_africa_middle_east
central_asia
not_specified
overall_min_freq
vegacoding  
vegaintronic  
vega5utr  
vega3utr  
vega5upstream  
vega3downstream  
vegasyn  
veganonsyn  
vegastop  
AttributeMinMax
type  
transcript_stable_id_v  
transcript_chrom_strand  
transcript_chrom_start  
transcript_chrom_end  
snp_chrom_start
gene_stable_id_v  
description  
display_id  
db_name  
family  
family_description  
snp_cds_start
snp_cdna_start
aa_position
is_synonymous
synonymous
is_nonsynonymous
nonsynonymous
is_stop
stop
syn_summary
peptide_shift
AttributeMinMax
gene_id
contig
transcript_id  
transcript_stable_id  
transcript_stable_id_v  
transcript_chrom_start  
transcript_chrom_end  
transcript_chrom_strand  
translation_id  
translation_stable_id  
translation_stable_id_v  
type  
snp_coding_type  
snp_cdna_start
snp_cds_start
aa_position
is_synonymous
synonymous
is_nonsynonymous
nonsynonymous
is_stop
stop
syn_summary
peptide_shift
freq  
subsnp_data